1 HAMP#1
146-217 aa · 72 aa · 16.1% of protein
Raw token
HAMP:146:0.000000000000461:217:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW826_RS00125
Histidine kinase, Classic
Clostridium sp. AM34-11AC · GCF_003435375
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435375#DW826_RS00125Stable P2CS identifier used across views.
GenomeGCF_003435375Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 446 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation3 items
2 HisKA#2
227-285 aa · 59 aa · 13.2% of protein
Raw token
HisKA:227:0.000000000162:285:59:643 HATPase_c#3
330-434 aa · 105 aa · 23.5% of protein
Raw token
HATPase_c:330:1.9e-26:434:108:109- Raw architecture: HAMP:146:0.000000000000461:217:72:69#HisKA:227:0.000000000162:285:59:64#HATPase_c:330:1.9e-26:434:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435375::NZ_QWGL01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17662-20335Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW826_00125RefSeq proteinWP_117551700.1
Context group ID
GCF_003435375::NZ_QWGL01000001.1::G00001Context members
DW826_RS00120DW826_RS00125
Partner locus tags
DW826_RS00120DW826_RS00125
Partner old locus tags
DW826_00120DW826_00125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117551700.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW826_RS00125Primary locus identifier stored in the genes table.
Old locus tagDW826_00125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGL01000001.1Sequence record reported by the local genomic context database.
Genomic interval18 995-20 335 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 662-20 335 ntGCF_003435375::NZ_QWGL01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435375::NZ_QWGL01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span17 662-20 335 nt2 674 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 662 nt20 335 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW826_RS00120GCF_003435375#DW826_RS00120
RRNtrC
17 662-19 017 nt · Reverse (-)
DW826_RS00125GCF_003435375#DW826_RS00125
HKClassicCurrent focus
18 995-20 335 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435375#DW826_RS00125The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2013373
Simplified PFAM architecture for HKOC_2013373
PFAM domain coverage: 219 / 446 aa (49.1%)
1 aa446 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-217] | HisKA[227-285] | HATPase_c[331-435]
- Domain count: 3
- Matched identifier: HKOC_2013373
- Positioned domains: HAMP 163-217 ; HisKA 227-285 ; HATPase_c 331-435
Cluster members and taxonomy
Representative gene: GCF_003435375#DW826_RS00125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 242 · GCF_003435375
AssemblyASM343537v1 · Scaffoldhaploid
Genome composition3 752 211 bp · 48,0% GCClostridium sp. AM34-11AC
Signal transduction countsGenes 61 · HK 29 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key