1 Response_reg#1
5-112 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:5:2.13e-31:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW826_RS03765
Response regulator OmpR family
Clostridium sp. AM34-11AC · GCF_003435375
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435375#DW826_RS03765Stable P2CS identifier used across views.
GenomeGCF_003435375Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:8.49e-32:221:77:77- Raw architecture: Response_reg:5:2.13e-31:112:109:111#Trans_reg_C:148:8.49e-32:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435375::NZ_QWGL01000002.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138279-141178Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW826_03775RefSeq proteinWP_117515285.1
Context group ID
GCF_003435375::NZ_QWGL01000002.1::G00020Context members
DW826_RS03760DW826_RS03765
Partner locus tags
DW826_RS03760DW826_RS03765
Partner old locus tags
DW826_03770DW826_03775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117515285.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW826_RS03765Primary locus identifier stored in the genes table.
Old locus tagDW826_03775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGL01000002.1Sequence record reported by the local genomic context database.
Genomic interval140 507-141 178 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 279-141 178 ntGCF_003435375::NZ_QWGL01000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435375::NZ_QWGL01000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span138 279-141 178 nt2 900 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 279 nt141 178 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW826_RS03760GCF_003435375#DW826_RS03760
HKClassic
138 279-140 504 nt · Reverse (-)
DW826_RS03765GCF_003435375#DW826_RS03765
RROmpRCurrent focus
140 507-141 178 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435375#DW826_RS03765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600085
Simplified PFAM architecture for RROC_1600085
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1600085
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_003435375#DW826_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 242 · GCF_003435375
AssemblyASM343537v1 · Scaffoldhaploid
Genome composition3 752 211 bp · 48,0% GCClostridium sp. AM34-11AC
Signal transduction countsGenes 61 · HK 29 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key