1 Response_reg#1
10-107 aa · 98 aa · 27.1% of protein
Raw token
Response_reg:10:3.87e-20:107:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW826_RS00980
Response regulator, CheB family
Clostridium sp. AM34-11AC · GCF_003435375
ClassRRTypeCheBLength362 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435375#DW826_RS00980Stable P2CS identifier used across views.
GenomeGCF_003435375Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage277 / 362 aa (76.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
177-355 aa · 179 aa · 49.4% of protein
Raw token
CheB_methylest:177:6.02e-80:355:180:177- Raw architecture: Response_reg:10:3.87e-20:107:102:111#CheB_methylest:177:6.02e-80:355:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435375::NZ_QWGL01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span227977-229065Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW826_00980RefSeq proteinWP_347472264.1
Context group ID
GCF_003435375::NZ_QWGL01000001.1::G00006Context members
DW826_RS00980
Partner locus tags
DW826_RS00980
Partner old locus tags
DW826_00980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347472264.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW826_RS00980Primary locus identifier stored in the genes table.
Old locus tagDW826_00980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGL01000001.1Sequence record reported by the local genomic context database.
Genomic interval227 977-229 065 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span227 977-229 065 ntGCF_003435375::NZ_QWGL01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435375::NZ_QWGL01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span227 977-229 065 nt1 089 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 977 nt229 065 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW826_RS00980GCF_003435375#DW826_RS00980
RRCheBCurrent focus
227 977-229 065 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS07940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455565
Simplified PFAM architecture for RROC_0455565
PFAM domain coverage: 284 / 362 aa (78.5%)
1 aa362 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[10-115] | CheB_methylest[177-354]
- Domain count: 2
- Matched identifier: RROC_0455565
- Positioned domains: Response_reg 10-115 ; Response_reg 10-115 ; CheB_methylest 177-354 ; CheB_methylest 177-354
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS07940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 242 · GCF_003435375
AssemblyASM343537v1 · Scaffoldhaploid
Genome composition3 752 211 bp · 48,0% GCClostridium sp. AM34-11AC
Signal transduction countsGenes 61 · HK 29 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key