1 dCache_1#1
129-306 aa · 178 aa · 28.1% of protein
Raw token
dCache_1:129:0.0000315:306:179:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS29480
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength633 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS29480Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length633 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage435 / 633 aa (68.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa633 aa
Domain-by-domain annotation4 items
2 HAMP#2
324-393 aa · 70 aa · 11.1% of protein
Raw token
HAMP:324:0.00000000000176:393:70:693 His_kinase#3
410-489 aa · 80 aa · 12.6% of protein
Raw token
His_kinase:410:2.76e-33:489:80:804 HATPase_c#4
510-616 aa · 107 aa · 16.9% of protein
Raw token
HATPase_c:510:0.00000000353:616:108:109- Raw architecture: dCache_1:129:0.0000315:306:179:195#HAMP:324:0.00000000000176:393:70:69#His_kinase:410:2.76e-33:489:80:80#HATPase_c:510:0.00000000353:616:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000030.1::G00099
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38518-42044Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_29475RefSeq proteinWP_029466134.1
Context group ID
GCF_003435045::NZ_QTJW01000030.1::G00099Context members
DWX31_RS29475DWX31_RS29480
Partner locus tags
DWX31_RS29475DWX31_RS29480
Partner old locus tags
DWX31_29470DWX31_29475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466134.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DCR1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DCR1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS29480Primary locus identifier stored in the genes table.
Old locus tagDWX31_29475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000030.1Sequence record reported by the local genomic context database.
Genomic interval40 143-42 044 nt1 902 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 518-42 044 ntGCF_003435045::NZ_QTJW01000030.1::G00099
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000030.1::G00099Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000030.1All displayed genes belong to this local TCS context.
Neighborhood span38 518-42 044 nt3 527 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 518 nt42 044 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS29475GCF_003435045#DWX31_RS29475
RRunclassified
38 518-40 146 nt · Reverse (-)
DWX31_RS29480GCF_003435045#DWX31_RS29480
HKClassicCurrent focus
40 143-42 044 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS29480The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0939551
Simplified PFAM architecture for HKOC_0939551
PFAM domain coverage: 236 / 633 aa (37.3%)
1 aa633 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[344-394] | His_kinase[411-487] | HATPase_c[510-617]
- Domain count: 3
- Matched identifier: HKOC_0939551
- Positioned domains: HAMP 344-394 ; His_kinase 411-487 ; HATPase_c 510-617
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS29480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key