1 HAMP#1
186-254 aa · 69 aa · 14.5% of protein
Raw token
HAMP:186:0.0000000035:254:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS21100
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS21100Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 475 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-322 aa · 61 aa · 12.8% of protein
Raw token
HisKA:262:0.000000000000301:322:61:643 HATPase_c#3
367-470 aa · 104 aa · 21.9% of protein
Raw token
HATPase_c:367:1.43e-22:470:108:109- Raw architecture: HAMP:186:0.0000000035:254:69:69#HisKA:262:0.000000000000301:322:61:64#HATPase_c:367:1.43e-22:470:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000015.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91660-93846Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_21090RefSeq proteinWP_029466164.1
Context group ID
GCF_003435045::NZ_QTJW01000015.1::G00045Context members
DWX31_RS21100DWX31_RS21105
Partner locus tags
DWX31_RS21100DWX31_RS21105
Partner old locus tags
DWX31_21090DWX31_21095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466164.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DH54Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DH54_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS21100Primary locus identifier stored in the genes table.
Old locus tagDWX31_21090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000015.1Sequence record reported by the local genomic context database.
Genomic interval91 660-93 087 nt1 428 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 660-93 846 ntGCF_003435045::NZ_QTJW01000015.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000015.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span91 660-93 846 nt2 187 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 660 nt93 846 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS21100GCF_003435045#DWX31_RS21100
HKClassicCurrent focus
91 660-93 087 nt · Reverse (-)
DWX31_RS21105GCF_003435045#DWX31_RS21105
RROmpR
93 091-93 846 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS21100The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1666758
Simplified PFAM architecture for HKOC_1666758
PFAM domain coverage: 164 / 475 aa (34.5%)
1 aa475 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[262-322] | HATPase_c[368-470]
- Domain count: 2
- Matched identifier: HKOC_1666758
- Positioned domains: HisKA 262-322 ; HATPase_c 368-470
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS21100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key