1 HAMP#1
290-360 aa · 71 aa · 12.2% of protein
Raw token
HAMP:290:0.0000000000135:360:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS20805
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS20805Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage205 / 580 aa (35.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
376-454 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:376:1.24e-24:454:80:803 HATPase_c#3
472-526 aa · 55 aa · 9.5% of protein
Raw token
HATPase_c:472:0.00000199:526:55:109- Raw architecture: HAMP:290:0.0000000000135:360:71:69#His_kinase:376:1.24e-24:454:80:80#HATPase_c:472:0.00000199:526:55:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000015.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19260-22701Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_20795RefSeq proteinWP_054355982.1
Context group ID
GCF_003435045::NZ_QTJW01000015.1::G00041Context members
DWX31_RS20800DWX31_RS20805
Partner locus tags
DWX31_RS20800DWX31_RS20805
Partner old locus tags
DWX31_20790DWX31_20795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054355982.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DH33Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DH33_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS20805Primary locus identifier stored in the genes table.
Old locus tagDWX31_20795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000015.1Sequence record reported by the local genomic context database.
Genomic interval20 959-22 701 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 260-22 701 ntGCF_003435045::NZ_QTJW01000015.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000015.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span19 260-22 701 nt3 442 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 260 nt22 701 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS20800GCF_003435045#DWX31_RS20800
RRunclassified
19 260-20 957 nt · Reverse (-)
DWX31_RS20805GCF_003435045#DWX31_RS20805
HKClassicCurrent focus
20 959-22 701 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS20805The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163138
Simplified PFAM architecture for HKOC_1163138
PFAM domain coverage: 132 / 580 aa (22.8%)
1 aa580 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[307-360] | His_kinase[376-453]
- Domain count: 2
- Matched identifier: HKOC_1163138
- Positioned domains: HAMP 307-360 ; His_kinase 376-453
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS20805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key