1 Response_reg#1
4-91 aa · 88 aa · 38.4% of protein
Raw token
Response_reg:4:0.00000000000000135:91:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS10990
Response regulator LytTR family
Hungatella hathewayi · GCF_003435045
ClassRRTypeLytTRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435045#DWX31_RS10990Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 229 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-223 aa · 83 aa · 36.2% of protein
Raw token
LytTR:141:5.27e-21:223:88:98- Raw architecture: Response_reg:4:0.00000000000000135:91:88:111#LytTR:141:5.27e-21:223:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435045::NZ_QTJW01000006.1::G00136
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span276664-277353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_10980RefSeq proteinWP_002603612.1
Context group ID
GCF_003435045::NZ_QTJW01000006.1::G00136Context members
DWX31_RS10990
Partner locus tags
DWX31_RS10990
Partner old locus tags
DWX31_10980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603612.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4UII1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4UII1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS10990Primary locus identifier stored in the genes table.
Old locus tagDWX31_10980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000006.1Sequence record reported by the local genomic context database.
Genomic interval276 664-277 353 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span276 664-277 353 ntGCF_003435045::NZ_QTJW01000006.1::G00136
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000006.1::G00136Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000006.1All displayed genes belong to this local TCS context.
Neighborhood span276 664-277 353 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 664 nt277 353 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX31_RS10990GCF_003435045#DWX31_RS10990
RRLytTRCurrent focus
276 664-277 353 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS30245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248836
Simplified PFAM architecture for RROC_1248836
PFAM domain coverage: 200 / 229 aa (87.3%)
1 aa229 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[138-223]
- Domain count: 2
- Matched identifier: RROC_1248836
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; LytTR 138-223 ; LytTR 138-223
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS30245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key