1 HAMP#1
63-132 aa · 70 aa · 19.3% of protein
Raw token
HAMP:63:0.0000000000764:132:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS05270
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength363 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS05270Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length363 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 363 aa (67.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa363 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-201 aa · 65 aa · 17.9% of protein
Raw token
HisKA:137:0.00000000000062:201:65:643 HATPase_c#3
246-354 aa · 109 aa · 30.0% of protein
Raw token
HATPase_c:246:5.99e-33:354:109:109- Raw architecture: HAMP:63:0.0000000000764:132:70:69#HisKA:137:0.00000000000062:201:65:64#HATPase_c:246:5.99e-33:354:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000003.1::G00096
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span229301-231063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_05265RefSeq proteinWP_029466618.1
Context group ID
GCF_003435045::NZ_QTJW01000003.1::G00096Context members
DWX31_RS05270DWX31_RS05275
Partner locus tags
DWX31_RS05270DWX31_RS05275
Partner old locus tags
DWX31_05265DWX31_05270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466618.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DQT8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DQT8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS05270Primary locus identifier stored in the genes table.
Old locus tagDWX31_05265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000003.1Sequence record reported by the local genomic context database.
Genomic interval229 301-230 392 nt1 092 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span229 301-231 063 ntGCF_003435045::NZ_QTJW01000003.1::G00096
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000003.1::G00096Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span229 301-231 063 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 301 nt231 063 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS05270GCF_003435045#DWX31_RS05270
HKClassicCurrent focus
229 301-230 392 nt · Reverse (-)
DWX31_RS05275GCF_003435045#DWX31_RS05275
RROmpR
230 389-231 063 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS05270The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2731621
Simplified PFAM architecture for HKOC_2731621
PFAM domain coverage: 224 / 363 aa (61.7%)
1 aa363 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[81-131] | HisKA[137-201] | HATPase_c[247-354]
- Domain count: 3
- Matched identifier: HKOC_2731621
- Positioned domains: HAMP 81-131 ; HisKA 137-201 ; HATPase_c 247-354
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS05270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key