1 dCache_1#1
174-300 aa · 127 aa · 20.8% of protein
Raw token
dCache_1:174:0.00000000444:300:132:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS04170
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS04170Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage387 / 611 aa (63.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 HAMP#2
314-382 aa · 69 aa · 11.3% of protein
Raw token
HAMP:314:3.18e-16:382:69:693 His_kinase#3
398-477 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:398:8.23e-25:477:80:804 HATPase_c#4
493-603 aa · 111 aa · 18.2% of protein
Raw token
HATPase_c:493:0.000000000157:603:111:109- Raw architecture: dCache_1:174:0.00000000444:300:132:195#HAMP:314:3.18e-16:382:69:69#His_kinase:398:8.23e-25:477:80:80#HATPase_c:493:0.000000000157:603:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000002.1::G00073
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span460073-463440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_04170RefSeq proteinWP_025531162.1
Context group ID
GCF_003435045::NZ_QTJW01000002.1::G00073Context members
DWX31_RS04170DWX31_RS04175
Partner locus tags
DWX31_RS04170DWX31_RS04175
Partner old locus tags
DWX31_04170DWX31_04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531162.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NYU1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NYU1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS04170Primary locus identifier stored in the genes table.
Old locus tagDWX31_04170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000002.1Sequence record reported by the local genomic context database.
Genomic interval460 073-461 908 nt1 836 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span460 073-463 440 ntGCF_003435045::NZ_QTJW01000002.1::G00073
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000002.1::G00073Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span460 073-463 440 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
460 073 nt463 440 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS04170GCF_003435045#DWX31_RS04170
HKClassicCurrent focus
460 073-461 908 nt · Forward (+)
DWX31_RS04175GCF_003435045#DWX31_RS04175
RRunclassified
461 905-463 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS04170The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1001676
Simplified PFAM architecture for HKOC_1001676
PFAM domain coverage: 240 / 611 aa (39.3%)
1 aa611 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[331-382] | His_kinase[398-475] | HATPase_c[495-604]
- Domain count: 3
- Matched identifier: HKOC_1001676
- Positioned domains: HAMP 331-382 ; His_kinase 398-475 ; HATPase_c 495-604
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS04170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key