1 HAMP#1
39-111 aa · 73 aa · 21.2% of protein
Raw token
HAMP:39:0.0000782:111:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS14030
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433865#DWZ89_RS14030Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 345 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-188 aa · 62 aa · 18.0% of protein
Raw token
HisKA:127:0.00000000000275:188:62:643 HATPase_c#3
234-343 aa · 110 aa · 31.9% of protein
Raw token
HATPase_c:234:1.82e-32:343:110:109- Raw architecture: HAMP:39:0.0000782:111:73:69#HisKA:127:0.00000000000275:188:62:64#HATPase_c:234:1.82e-32:343:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433865::NZ_QVEQ01000028.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8799-9836Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_14030RefSeq proteinWP_117506350.1
Context group ID
GCF_003433865::NZ_QVEQ01000028.1::G00013Context members
DWZ89_RS14030
Partner locus tags
DWZ89_RS14030
Partner old locus tags
DWZ89_14030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117506350.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2SXB2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2SXB2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS14030Primary locus identifier stored in the genes table.
Old locus tagDWZ89_14030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000028.1Sequence record reported by the local genomic context database.
Genomic interval8 799-9 836 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 799-9 836 ntGCF_003433865::NZ_QVEQ01000028.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000028.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000028.1All displayed genes belong to this local TCS context.
Neighborhood span8 799-9 836 nt1 038 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 799 nt9 836 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ89_RS14030GCF_003433865#DWZ89_RS14030
HKClassicCurrent focus
8 799-9 836 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS14030The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2819883
Simplified PFAM architecture for HKOC_2819883
PFAM domain coverage: 173 / 345 aa (50.1%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-342]
- Domain count: 2
- Matched identifier: HKOC_2819883
- Positioned domains: HisKA 125-188 ; HATPase_c 234-342
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS14030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key