1 Response_reg#1
2-114 aa · 113 aa · 49.3% of protein
Raw token
Response_reg:2:7.63e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS01585
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003433865
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS01585Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:147:5.09e-29:220:77:77- Raw architecture: Response_reg:2:7.63e-32:114:113:111#Trans_reg_C:147:5.09e-29:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328697-330732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_01585RefSeq proteinWP_097771952.1
Context group ID
GCF_003433865::NZ_QVEQ01000001.1::G00004Context members
DWZ89_RS01585DWZ89_RS01590
Partner locus tags
DWZ89_RS01585DWZ89_RS01590
Partner old locus tags
DWZ89_01585DWZ89_01590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097771952.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AL38Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AL38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS01585Primary locus identifier stored in the genes table.
Old locus tagDWZ89_01585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval328 697-329 386 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span328 697-330 732 ntGCF_003433865::NZ_QVEQ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span328 697-330 732 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 697 nt330 732 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS01585GCF_003433865#DWZ89_RS01585
RROmpRCurrent focus
328 697-329 386 nt · Forward (+)
DWZ89_RS01590GCF_003433865#DWZ89_RS01590
HKClassic
329 383-330 732 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS01585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260945
Simplified PFAM architecture for RROC_1260945
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1260945
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS01585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key