1 HisKA#1
54-113 aa · 60 aa · 22.6% of protein
Raw token
HisKA:54:0.0000000000000152:113:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS13605
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength265 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433865#DWZ89_RS13605Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 265 aa (54.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
165-249 aa · 85 aa · 32.1% of protein
Raw token
HATPase_c:165:0.000000000000373:249:89:109- Raw architecture: HisKA:54:0.0000000000000152:113:60:64#HATPase_c:165:0.000000000000373:249:89:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433865::NZ_QVEQ01000023.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14813-15610Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_13605RefSeq proteinWP_242985260.1
Context group ID
GCF_003433865::NZ_QVEQ01000023.1::G00012Context members
DWZ89_RS13605
Partner locus tags
DWZ89_RS13605
Partner old locus tags
DWZ89_13605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242985260.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS13605Primary locus identifier stored in the genes table.
Old locus tagDWZ89_13605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000023.1Sequence record reported by the local genomic context database.
Genomic interval14 813-15 610 nt798 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 813-15 610 ntGCF_003433865::NZ_QVEQ01000023.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000023.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000023.1All displayed genes belong to this local TCS context.
Neighborhood span14 813-15 610 nt798 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 813 nt15 610 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ89_RS13605GCF_003433865#DWZ89_RS13605
HKClassicCurrent focus
14 813-15 610 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433905#DWZ25_RS15220Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2886994
Simplified PFAM architecture for HKOC_2886994
PFAM domain coverage: 151 / 300 aa (50.3%)
1 aa300 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[200-287]
- Domain count: 2
- Matched identifier: HKOC_2886994
- Positioned domains: HisKA 86-148 ; HATPase_c 200-287
Cluster members and taxonomy
Representative gene: GCF_003433905#DWZ25_RS15220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key