1 HAMP#1
177-246 aa · 70 aa · 13.9% of protein
Raw token
HAMP:177:0.00000000000000354:246:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS11285
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength504 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS11285Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 504 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-317 aa · 67 aa · 13.3% of protein
Raw token
HisKA:251:3.51e-19:317:67:643 HATPase_c#3
363-475 aa · 113 aa · 22.4% of protein
Raw token
HATPase_c:363:6.6e-30:475:113:109- Raw architecture: HAMP:177:0.00000000000000354:246:70:69#HisKA:251:3.51e-19:317:67:64#HATPase_c:363:6.6e-30:475:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49739-51951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_11290RefSeq proteinWP_117506037.1
Context group ID
GCF_003433865::NZ_QVEQ01000011.1::G00006Context members
DWZ89_RS11280DWZ89_RS11285
Partner locus tags
DWZ89_RS11280DWZ89_RS11285
Partner old locus tags
DWZ89_11285DWZ89_11290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117506037.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2T718Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2T718_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS11285Primary locus identifier stored in the genes table.
Old locus tagDWZ89_11290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000011.1Sequence record reported by the local genomic context database.
Genomic interval50 437-51 951 nt1 515 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 739-51 951 ntGCF_003433865::NZ_QVEQ01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span49 739-51 951 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 739 nt51 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS11280GCF_003433865#DWZ89_RS11280
RROmpR
49 739-50 437 nt · Forward (+)
DWZ89_RS11285GCF_003433865#DWZ89_RS11285
HKClassicCurrent focus
50 437-51 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS11285The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1455195
Simplified PFAM architecture for HKOC_1455195
PFAM domain coverage: 231 / 504 aa (45.8%)
1 aa504 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-246] | HisKA[251-317] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1455195
- Positioned domains: HAMP 194-246 ; HisKA 251-317 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS11285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key