1 HAMP#1
176-247 aa · 72 aa · 15.2% of protein
Raw token
HAMP:176:0.0000000000124:247:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS09380
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS09380Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 473 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-318 aa · 68 aa · 14.4% of protein
Raw token
HisKA:251:2.63e-18:318:68:643 HATPase_c#3
364-469 aa · 106 aa · 22.4% of protein
Raw token
HATPase_c:364:2.77e-29:469:107:109- Raw architecture: HAMP:176:0.0000000000124:247:72:69#HisKA:251:2.63e-18:318:68:64#HATPase_c:364:2.77e-29:469:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000007.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101398-103605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_09380RefSeq proteinWP_117505832.1
Context group ID
GCF_003433865::NZ_QVEQ01000007.1::G00025Context members
DWZ89_RS09375DWZ89_RS09380
Partner locus tags
DWZ89_RS09375DWZ89_RS09380
Partner old locus tags
DWZ89_09375DWZ89_09380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117505832.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2T974Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2T974_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS09380Primary locus identifier stored in the genes table.
Old locus tagDWZ89_09380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000007.1Sequence record reported by the local genomic context database.
Genomic interval102 184-103 605 nt1 422 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 398-103 605 ntGCF_003433865::NZ_QVEQ01000007.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000007.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span101 398-103 605 nt2 208 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 398 nt103 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS09375GCF_003433865#DWZ89_RS09375
RROmpR
101 398-102 102 nt · Forward (+)
DWZ89_RS09380GCF_003433865#DWZ89_RS09380
HKClassicCurrent focus
102 184-103 605 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS09380The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1689209
Simplified PFAM architecture for HKOC_1689209
PFAM domain coverage: 228 / 473 aa (48.2%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-247] | HisKA[251-318] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1689209
- Positioned domains: HAMP 194-247 ; HisKA 251-318 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS09380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key