1 HAMP#1
207-276 aa · 70 aa · 13.9% of protein
Raw token
HAMP:207:1.34e-16:276:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS08990
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength503 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS08990Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length503 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 503 aa (48.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa503 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:9.77e-17:347:68:643 HATPase_c#3
393-497 aa · 105 aa · 20.9% of protein
Raw token
HATPase_c:393:8.26e-27:497:105:109- Raw architecture: HAMP:207:1.34e-16:276:70:69#HisKA:280:9.77e-17:347:68:64#HATPase_c:393:8.26e-27:497:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000007.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39520-41736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_08990RefSeq proteinWP_117505805.1
Context group ID
GCF_003433865::NZ_QVEQ01000007.1::G00024Context members
DWZ89_RS08985DWZ89_RS08990
Partner locus tags
DWZ89_RS08985DWZ89_RS08990
Partner old locus tags
DWZ89_08985DWZ89_08990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117505805.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2T920Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2T920_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS08990Primary locus identifier stored in the genes table.
Old locus tagDWZ89_08990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000007.1Sequence record reported by the local genomic context database.
Genomic interval40 225-41 736 nt1 512 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 520-41 736 ntGCF_003433865::NZ_QVEQ01000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span39 520-41 736 nt2 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 520 nt41 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS08985GCF_003433865#DWZ89_RS08985
RROmpR
39 520-40 206 nt · Forward (+)
DWZ89_RS08990GCF_003433865#DWZ89_RS08990
HKClassicCurrent focus
40 225-41 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS08990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1460092
Simplified PFAM architecture for HKOC_1460092
PFAM domain coverage: 219 / 503 aa (43.5%)
1 aa503 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-275] | HisKA[281-347] | HATPase_c[394-497]
- Domain count: 3
- Matched identifier: HKOC_1460092
- Positioned domains: HAMP 228-275 ; HisKA 281-347 ; HATPase_c 394-497
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS08990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key