1 Response_reg#1
31-121 aa · 91 aa · 37.9% of protein
Raw token
Response_reg:31:0.00000162:121:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS07710
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003433865
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433865#DWZ89_RS07710Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-234 aa · 96 aa · 40.0% of protein
Raw token
LytTR:139:0.00000000000000579:234:101:98- Raw architecture: Response_reg:31:0.00000162:121:95:111#LytTR:139:0.00000000000000579:234:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433865::NZ_QVEQ01000005.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span72972-73694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_07710RefSeq proteinWP_117505663.1
Context group ID
GCF_003433865::NZ_QVEQ01000005.1::G00023Context members
DWZ89_RS07710
Partner locus tags
DWZ89_RS07710
Partner old locus tags
DWZ89_07710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117505663.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2T9Y3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2T9Y3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS07710Primary locus identifier stored in the genes table.
Old locus tagDWZ89_07710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000005.1Sequence record reported by the local genomic context database.
Genomic interval72 972-73 694 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 972-73 694 ntGCF_003433865::NZ_QVEQ01000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span72 972-73 694 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 972 nt73 694 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ89_RS07710GCF_003433865#DWZ89_RS07710
RRLytTRCurrent focus
72 972-73 694 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS07710The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0888228
Simplified PFAM architecture for RROC_0888228
PFAM domain coverage: 93 / 240 aa (38.8%)
1 aa240 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[141-233]
- Domain count: 1
- Matched identifier: RROC_0888228
- Positioned domains: LytTR 141-233 ; LytTR 141-233
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS07710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key