1 HisKA#1
124-192 aa · 69 aa · 19.3% of protein
Raw token
HisKA:124:0.0000000000185:192:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS06990
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS06990Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 358 aa (49.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
236-344 aa · 109 aa · 30.4% of protein
Raw token
HATPase_c:236:1.44e-27:344:109:109- Raw architecture: HisKA:124:0.0000000000185:192:69:64#HATPase_c:236:1.44e-27:344:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000004.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59462-61253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_06990RefSeq proteinWP_117505528.1
Context group ID
GCF_003433865::NZ_QVEQ01000004.1::G00020Context members
DWZ89_RS06990DWZ89_RS06995
Partner locus tags
DWZ89_RS06990DWZ89_RS06995
Partner old locus tags
DWZ89_06990DWZ89_06995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117505528.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TAE0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TAE0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS06990Primary locus identifier stored in the genes table.
Old locus tagDWZ89_06990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval59 462-60 538 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 462-61 253 ntGCF_003433865::NZ_QVEQ01000004.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000004.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span59 462-61 253 nt1 792 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 462 nt61 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS06990GCF_003433865#DWZ89_RS06990
HKClassicCurrent focus
59 462-60 538 nt · Forward (+)
DWZ89_RS06995GCF_003433865#DWZ89_RS06995
RROmpR
60 528-61 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS06990The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2760411
Simplified PFAM architecture for HKOC_2760411
PFAM domain coverage: 283 / 358 aa (79.1%)
1 aa358 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[12-116] | HisKA[125-192] | HATPase_c[237-346]
- Domain count: 3
- Matched identifier: HKOC_2760411
- Positioned domains: DUF4118 12-116 ; HisKA 125-192 ; HATPase_c 237-346
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS06990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key