1 Response_reg#1
3-117 aa · 115 aa · 47.9% of protein
Raw token
Response_reg:3:0.00000000000000256:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS05285
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003433865
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433865#DWZ89_RS05285Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 240 aa (86.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.3% of protein
Raw token
LytTR:139:0.0000000262:230:97:98- Raw architecture: Response_reg:3:0.00000000000000256:117:117:111#LytTR:139:0.0000000262:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433865::NZ_QVEQ01000003.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span102485-103207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_05285RefSeq proteinWP_097770654.1
Context group ID
GCF_003433865::NZ_QVEQ01000003.1::G00016Context members
DWZ89_RS05285
Partner locus tags
DWZ89_RS05285
Partner old locus tags
DWZ89_05285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097770654.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7BEF2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7BEF2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS05285Primary locus identifier stored in the genes table.
Old locus tagDWZ89_05285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000003.1Sequence record reported by the local genomic context database.
Genomic interval102 485-103 207 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span102 485-103 207 ntGCF_003433865::NZ_QVEQ01000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span102 485-103 207 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 485 nt103 207 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ89_RS05285GCF_003433865#DWZ89_RS05285
RRLytTRCurrent focus
102 485-103 207 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550045#CHR61_RS05885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0886969
Simplified PFAM architecture for RROC_0886969
PFAM domain coverage: 204 / 240 aa (85.0%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0886969
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_002550045#CHR61_RS05885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key