1 Response_reg#1
4-115 aa · 112 aa · 21.4% of protein
Raw token
Response_reg:4:5.53e-22:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS02765
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_003433865
ClassRRTypeunclassifiedLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS02765Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 523 aa (29.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
429-469 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:429:0.000000249:469:41:42- Raw architecture: Response_reg:4:5.53e-22:115:113:111#HTH_AraC:429:0.000000249:469:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15823-19079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_02760RefSeq proteinWP_117504484.1
Context group ID
GCF_003433865::NZ_QVEQ01000002.1::G00007Context members
DWZ89_RS02760DWZ89_RS02765
Partner locus tags
DWZ89_RS02760DWZ89_RS02765
Partner old locus tags
DWZ89_02755DWZ89_02760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117504484.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TDP4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TDP4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS02765Primary locus identifier stored in the genes table.
Old locus tagDWZ89_02760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval17 508-19 079 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 823-19 079 ntGCF_003433865::NZ_QVEQ01000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span15 823-19 079 nt3 257 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 823 nt19 079 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS02760GCF_003433865#DWZ89_RS02760
HKClassic
15 823-17 511 nt · Forward (+)
DWZ89_RS02765GCF_003433865#DWZ89_RS02765
RRunclassifiedCurrent focus
17 508-19 079 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS02765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0121904
Simplified PFAM architecture for RROC_0121904
PFAM domain coverage: 190 / 523 aa (36.3%)
1 aa523 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[442-519]
- Domain count: 2
- Matched identifier: RROC_0121904
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 442-519 ; HTH_18 442-519
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS02765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key