1 HAMP#1
260-331 aa · 72 aa · 12.8% of protein
Raw token
HAMP:260:0.0000000000477:331:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS02760
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003433865
ClassHKTypeClassicLength562 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433865#DWZ89_RS02760Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length562 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 562 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa562 aa
Domain-by-domain annotation3 items
2 His_kinase#2
347-416 aa · 70 aa · 12.5% of protein
Raw token
His_kinase:347:1.77e-20:416:70:803 HATPase_c#3
448-552 aa · 105 aa · 18.7% of protein
Raw token
HATPase_c:448:0.00000000154:552:109:109- Raw architecture: HAMP:260:0.0000000000477:331:72:69#His_kinase:347:1.77e-20:416:70:80#HATPase_c:448:0.00000000154:552:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433865::NZ_QVEQ01000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15823-19079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_02755RefSeq proteinWP_117504482.1
Context group ID
GCF_003433865::NZ_QVEQ01000002.1::G00007Context members
DWZ89_RS02760DWZ89_RS02765
Partner locus tags
DWZ89_RS02760DWZ89_RS02765
Partner old locus tags
DWZ89_02755DWZ89_02760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117504482.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TC45Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TC45_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS02760Primary locus identifier stored in the genes table.
Old locus tagDWZ89_02755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval15 823-17 511 nt1 689 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 823-19 079 ntGCF_003433865::NZ_QVEQ01000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span15 823-19 079 nt3 257 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 823 nt19 079 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ89_RS02760GCF_003433865#DWZ89_RS02760
HKClassicCurrent focus
15 823-17 511 nt · Forward (+)
DWZ89_RS02765GCF_003433865#DWZ89_RS02765
RRunclassified
17 508-19 079 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS02760The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1250284
Simplified PFAM architecture for HKOC_1250284
PFAM domain coverage: 226 / 562 aa (40.2%)
1 aa562 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[283-330] | His_kinase[347-419] | HATPase_c[447-551]
- Domain count: 3
- Matched identifier: HKOC_1250284
- Positioned domains: HAMP 283-330 ; His_kinase 347-419 ; HATPase_c 447-551
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS02760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key