1 Response_reg#1
3-105 aa · 103 aa · 42.7% of protein
Raw token
Response_reg:3:0.00000000000227:105:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ89_RS01955
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003433865
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433865#DWZ89_RS01955Stable P2CS identifier used across views.
GenomeGCF_003433865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 241 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-228 aa · 87 aa · 36.1% of protein
Raw token
LytTR:142:5.93e-18:228:92:98- Raw architecture: Response_reg:3:0.00000000000227:105:105:111#LytTR:142:5.93e-18:228:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433865::NZ_QVEQ01000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span405967-406692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ89_01955RefSeq proteinWP_117504210.1
Context group ID
GCF_003433865::NZ_QVEQ01000001.1::G00005Context members
DWZ89_RS01955
Partner locus tags
DWZ89_RS01955
Partner old locus tags
DWZ89_01955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117504210.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS8FCF8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS8FCF8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ89_RS01955Primary locus identifier stored in the genes table.
Old locus tagDWZ89_01955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval405 967-406 692 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span405 967-406 692 ntGCF_003433865::NZ_QVEQ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433865::NZ_QVEQ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span405 967-406 692 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
405 967 nt406 692 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ89_RS01955GCF_003433865#DWZ89_RS01955
RRLytTRCurrent focus
405 967-406 692 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433865#DWZ89_RS01955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867672
Simplified PFAM architecture for RROC_0867672
PFAM domain coverage: 192 / 241 aa (79.7%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-106] | LytTR[142-229]
- Domain count: 2
- Matched identifier: RROC_0867672
- Positioned domains: Response_reg 3-106 ; Response_reg 3-106 ; LytTR 142-229 ; LytTR 142-229
Cluster members and taxonomy
Representative gene: GCF_003433865#DWZ89_RS01955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003433865
AssemblyASM343386v1 · Scaffoldhaploid
Genome composition2 975 205 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 43 · HK 19 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key