1 Response_reg#1
49-118 aa · 70 aa · 29.9% of protein
Raw token
Response_reg:49:0.0000147:118:72:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW120_RS01410
Response regulator LytTR family
Absiella sp. AM10-20 · GCF_003433755
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433755#DW120_RS01410Stable P2CS identifier used across views.
GenomeGCF_003433755Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 234 aa (68.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
135-225 aa · 91 aa · 38.9% of protein
Raw token
LytTR:135:0.00000000000234:225:96:98- Raw architecture: Response_reg:49:0.0000147:118:72:111#LytTR:135:0.00000000000234:225:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433755::NZ_QVFH01000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span320506-321210Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW120_01410RefSeq proteinWP_117453868.1
Context group ID
GCF_003433755::NZ_QVFH01000001.1::G00005Context members
DW120_RS01410
Partner locus tags
DW120_RS01410
Partner old locus tags
DW120_01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453868.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RC68Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RC68_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW120_RS01410Primary locus identifier stored in the genes table.
Old locus tagDW120_01410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFH01000001.1Sequence record reported by the local genomic context database.
Genomic interval320 506-321 210 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span320 506-321 210 ntGCF_003433755::NZ_QVFH01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433755::NZ_QVFH01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span320 506-321 210 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
320 506 nt321 210 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW120_RS01410GCF_003433755#DW120_RS01410
RRLytTRCurrent focus
320 506-321 210 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS02365Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1055461
Simplified PFAM architecture for RROC_1055461
PFAM domain coverage: 89 / 234 aa (38.0%)
1 aa234 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[137-225]
- Domain count: 1
- Matched identifier: RROC_1055461
- Positioned domains: LytTR 137-225 ; LytTR 137-225
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS02365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 995 · GCF_003433755
AssemblyASM343375v1 · Scaffoldhaploid
Genome composition4 368 209 bp · 35,5% GCAbsiella sp. AM10-20
Signal transduction countsGenes 98 · HK 44 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key