1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:2.25e-31:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW120_RS00100
Response regulator OmpR family
Absiella sp. AM10-20 · GCF_003433755
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433755#DW120_RS00100Stable P2CS identifier used across views.
GenomeGCF_003433755Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-217 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:143:3.89e-22:217:76:77- Raw architecture: Response_reg:4:2.25e-31:109:110:111#Trans_reg_C:143:3.89e-22:217:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433755::NZ_QVFH01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24233-24895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW120_00100RefSeq proteinWP_117454159.1
Context group ID
GCF_003433755::NZ_QVFH01000001.1::G00002Context members
DW120_RS00100
Partner locus tags
DW120_RS00100
Partner old locus tags
DW120_00100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454159.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R6H6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R6H6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW120_RS00100Primary locus identifier stored in the genes table.
Old locus tagDW120_00100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFH01000001.1Sequence record reported by the local genomic context database.
Genomic interval24 233-24 895 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 233-24 895 ntGCF_003433755::NZ_QVFH01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433755::NZ_QVFH01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span24 233-24 895 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 233 nt24 895 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW120_RS00100GCF_003433755#DW120_RS00100
RROmpRCurrent focus
24 233-24 895 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS01060Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732339
Simplified PFAM architecture for RROC_1732339
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[143-217]
- Domain count: 2
- Matched identifier: RROC_1732339
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; Trans_reg_C 143-217 ; Trans_reg_C 143-217
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS01060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 995 · GCF_003433755
AssemblyASM343375v1 · Scaffoldhaploid
Genome composition4 368 209 bp · 35,5% GCAbsiella sp. AM10-20
Signal transduction countsGenes 98 · HK 44 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key