1 HAMP#1
155-229 aa · 75 aa · 16.1% of protein
Raw token
HAMP:155:0.00000187:229:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS20860
Histidine kinase, Classic
Absiella sp. AM09-45 · GCF_003433745
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433745#DW113_RS20860Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 467 aa (56.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 His_kinase#2
261-340 aa · 80 aa · 17.1% of protein
Raw token
His_kinase:261:1.45e-27:340:80:803 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:0.0000000000000324:465:109:109- Raw architecture: HAMP:155:0.00000187:229:76:69#His_kinase:261:1.45e-27:340:80:80#HATPase_c:359:0.0000000000000324:465:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433745::NZ_QVFJ01000067.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3107-4511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_20860RefSeq proteinWP_394336518.1
Context group ID
GCF_003433745::NZ_QVFJ01000067.1::G00053Context members
DW113_RS20860
Partner locus tags
DW113_RS20860
Partner old locus tags
DW113_20860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_394336518.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS20860Primary locus identifier stored in the genes table.
Old locus tagDW113_20860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000067.1Sequence record reported by the local genomic context database.
Genomic interval3 107-4 511 nt1 405 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 107-4 511 ntGCF_003433745::NZ_QVFJ01000067.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000067.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000067.1All displayed genes belong to this local TCS context.
Neighborhood span3 107-4 511 nt1 405 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 107 nt4 511 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW113_RS20860GCF_003433745#DW113_RS20860
HKClassicCurrent focus
3 107-4 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS09560Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1561263
Simplified PFAM architecture for HKOC_1561263
PFAM domain coverage: 184 / 487 aa (37.8%)
1 aa487 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[281-359] | HATPase_c[379-483]
- Domain count: 2
- Matched identifier: HKOC_1561263
- Positioned domains: His_kinase 281-359 ; HATPase_c 379-483
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS09560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key