1 HAMP#1
175-249 aa · 75 aa · 15.4% of protein
Raw token
HAMP:175:0.00000225:249:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS09560
Histidine kinase, Classic
Absiella sp. AM22-9 · GCF_003433695
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS09560Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 487 aa (53.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 His_kinase#2
281-360 aa · 80 aa · 16.4% of protein
Raw token
His_kinase:281:2.21e-27:360:80:803 HATPase_c#3
379-485 aa · 107 aa · 22.0% of protein
Raw token
HATPase_c:379:0.0000000000000329:485:109:109- Raw architecture: HAMP:175:0.00000225:249:76:69#His_kinase:281:2.21e-27:360:80:80#HATPase_c:379:0.0000000000000329:485:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000005.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span203361-206296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_09555RefSeq proteinWP_117455515.1
Context group ID
GCF_003433695::NZ_QVFG01000005.1::G00051Context members
DW271_RS09555DW271_RS09560
Partner locus tags
DW271_RS09555DW271_RS09560
Partner old locus tags
DW271_09550DW271_09555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117455515.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R736Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R736_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS09560Primary locus identifier stored in the genes table.
Old locus tagDW271_09555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000005.1Sequence record reported by the local genomic context database.
Genomic interval204 833-206 296 nt1 464 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span203 361-206 296 ntGCF_003433695::NZ_QVFG01000005.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000005.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span203 361-206 296 nt2 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 361 nt206 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS09555GCF_003433695#DW271_RS09555
RRunclassified
203 361-204 836 nt · Reverse (-)
DW271_RS09560GCF_003433695#DW271_RS09560
HKClassicCurrent focus
204 833-206 296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS09560The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1561263
Simplified PFAM architecture for HKOC_1561263
PFAM domain coverage: 184 / 487 aa (37.8%)
1 aa487 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[281-359] | HATPase_c[379-483]
- Domain count: 2
- Matched identifier: HKOC_1561263
- Positioned domains: His_kinase 281-359 ; HATPase_c 379-483
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS09560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key