1 Response_reg#1
19-114 aa · 96 aa · 41.0% of protein
Raw token
Response_reg:19:0.00000000000765:114:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS09025
Response regulator LytTR family
Absiella sp. AM09-45 · GCF_003433745
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433745#DW113_RS09025Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-222 aa · 89 aa · 38.0% of protein
Raw token
LytTR:134:6.21e-17:222:91:98- Raw architecture: Response_reg:19:0.00000000000765:114:102:111#LytTR:134:6.21e-17:222:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433745::NZ_QVFJ01000011.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1095-1799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_09025RefSeq proteinWP_128125144.1
Context group ID
GCF_003433745::NZ_QVFJ01000011.1::G00003Context members
DW113_RS09025
Partner locus tags
DW113_RS09025
Partner old locus tags
DW113_09025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_128125144.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R3W3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R3W3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS09025Primary locus identifier stored in the genes table.
Old locus tagDW113_09025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval1 095-1 799 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 095-1 799 ntGCF_003433745::NZ_QVFJ01000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span1 095-1 799 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 095 nt1 799 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW113_RS09025GCF_003433745#DW113_RS09025
RRLytTRCurrent focus
1 095-1 799 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055463
Simplified PFAM architecture for RROC_1055463
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-113] | LytTR[135-223]
- Domain count: 2
- Matched identifier: RROC_1055463
- Positioned domains: Response_reg 19-113 ; Response_reg 19-113 ; LytTR 135-223 ; LytTR 135-223
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key