1 Response_reg#1
19-114 aa · 96 aa · 41.0% of protein
Raw token
Response_reg:19:0.00000000000765:114:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS03590
Response regulator LytTR family
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433695#DW271_RS03590Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-222 aa · 89 aa · 38.0% of protein
Raw token
LytTR:134:6.21e-17:222:91:98- Raw architecture: Response_reg:19:0.00000000000765:114:102:111#LytTR:134:6.21e-17:222:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433695::NZ_QVFG01000002.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span123726-124430Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_03590RefSeq proteinWP_128125144.1
Context group ID
GCF_003433695::NZ_QVFG01000002.1::G00027Context members
DW271_RS03590
Partner locus tags
DW271_RS03590
Partner old locus tags
DW271_03590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_128125144.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R3W3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R3W3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS03590Primary locus identifier stored in the genes table.
Old locus tagDW271_03590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000002.1Sequence record reported by the local genomic context database.
Genomic interval123 726-124 430 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 726-124 430 ntGCF_003433695::NZ_QVFG01000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000002.1All displayed genes belong to this local TCS context.
Neighborhood span123 726-124 430 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 726 nt124 430 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW271_RS03590GCF_003433695#DW271_RS03590
RRLytTRCurrent focus
123 726-124 430 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055463
Simplified PFAM architecture for RROC_1055463
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-113] | LytTR[135-223]
- Domain count: 2
- Matched identifier: RROC_1055463
- Positioned domains: Response_reg 19-113 ; Response_reg 19-113 ; LytTR 135-223 ; LytTR 135-223
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key