1 Response_reg#1
4-117 aa · 114 aa · 48.5% of protein
Raw token
Response_reg:4:6.77e-33:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS16090
Response regulator OmpR family
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS16090Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 235 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:156:1.18e-35:231:76:77- Raw architecture: Response_reg:4:6.77e-33:117:115:111#Trans_reg_C:156:1.18e-35:231:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000015.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45274-46904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_16085RefSeq proteinWP_117454783.1
Context group ID
GCF_003433695::NZ_QVFG01000015.1::G00020Context members
DW271_RS16085DW271_RS16090
Partner locus tags
DW271_RS16085DW271_RS16090
Partner old locus tags
DW271_16080DW271_16085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454783.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RCE4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RCE4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS16090Primary locus identifier stored in the genes table.
Old locus tagDW271_16085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000015.1Sequence record reported by the local genomic context database.
Genomic interval46 197-46 904 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 274-46 904 ntGCF_003433695::NZ_QVFG01000015.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000015.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000015.1All displayed genes belong to this local TCS context.
Neighborhood span45 274-46 904 nt1 631 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 274 nt46 904 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS16085GCF_003433695#DW271_RS16085
HKClassic
45 274-46 194 nt · Reverse (-)
DW271_RS16090GCF_003433695#DW271_RS16090
RROmpRCurrent focus
46 197-46 904 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS16090The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1024427
Simplified PFAM architecture for RROC_1024427
PFAM domain coverage: 190 / 235 aa (80.9%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-117] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1024427
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS16090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key