1 Response_reg#1
6-111 aa · 106 aa · 29.3% of protein
Raw token
Response_reg:6:2.84e-26:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS11055
Response regulator RpfG family
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeRpfGLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS11055Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 362 aa (56.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 HD#2
208-305 aa · 98 aa · 27.1% of protein
Raw token
HD:208:0.0000000000181:305:98:110- Raw architecture: Response_reg:6:2.84e-26:111:107:111#HD:208:0.0000000000181:305:98:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000007.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46425-50412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_11050RefSeq proteinWP_117454450.1
Context group ID
GCF_003433695::NZ_QVFG01000007.1::G00055Context members
DW271_RS11055DW271_RS11060
Partner locus tags
DW271_RS11055DW271_RS11060
Partner old locus tags
DW271_11050DW271_11055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454450.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R7P0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R7P0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS11055Primary locus identifier stored in the genes table.
Old locus tagDW271_11050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000007.1Sequence record reported by the local genomic context database.
Genomic interval46 425-47 513 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 425-50 412 ntGCF_003433695::NZ_QVFG01000007.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000007.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000007.1All displayed genes belong to this local TCS context.
Neighborhood span46 425-50 412 nt3 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 425 nt50 412 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS11055GCF_003433695#DW271_RS11055
RRRpfGCurrent focus
46 425-47 513 nt · Forward (+)
DW271_RS11060GCF_003433695#DW271_RS11060
HKHybrid
47 500-50 412 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS11055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455563
Simplified PFAM architecture for RROC_0455563
PFAM domain coverage: 227 / 362 aa (62.7%)
1 aa362 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[6-111] | HD_5[206-326]
- Domain count: 2
- Matched identifier: RROC_0455563
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; HD_5 206-326 ; HD_5 206-326
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS11055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key