1 HisKA#1
139-202 aa · 64 aa · 16.6% of protein
Raw token
HisKA:139:0.0000846:202:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS09130
Histidine kinase, Classic
Absiella sp. AM22-9 · GCF_003433695
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003433695#DW271_RS09130Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 386 aa (44.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
251-358 aa · 108 aa · 28.0% of protein
Raw token
HATPase_c:251:0.000000000000755:358:112:109- Raw architecture: HisKA:139:0.0000846:202:64:64#HATPase_c:251:0.000000000000755:358:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003433695::NZ_QVFG01000005.1::G00050
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span111614-114553Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_09125RefSeq proteinWP_117536375.1
Context group ID
GCF_003433695::NZ_QVFG01000005.1::G00050Context members
DW271_RS09130DW271_RS09135DW271_RS09140
Partner locus tags
DW271_RS09130DW271_RS09135DW271_RS09140
Partner old locus tags
DW271_09125DW271_09130DW271_09135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117536375.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS09130Primary locus identifier stored in the genes table.
Old locus tagDW271_09125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000005.1Sequence record reported by the local genomic context database.
Genomic interval111 614-112 774 nt1 161 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span111 614-114 553 ntGCF_003433695::NZ_QVFG01000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span111 614-114 553 nt2 940 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 614 nt114 553 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW271_RS09130GCF_003433695#DW271_RS09130
HKClassicCurrent focus
111 614-112 774 nt · Reverse (-)
DW271_RS09135GCF_003433695#DW271_RS09135
HKClassic
112 771-113 871 nt · Reverse (-)
DW271_RS09140GCF_003433695#DW271_RS09140
RROmpR
113 861-114 553 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS09130The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2559064
Simplified PFAM architecture for HKOC_2559064
PFAM domain coverage: 107 / 386 aa (27.7%)
1 aa386 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[252-358]
- Domain count: 1
- Matched identifier: HKOC_2559064
- Positioned domains: HATPase_c 252-358
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS09130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key