1 Response_reg#1
12-121 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:12:1.58e-23:121:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW244_RS09460
Response regulator OmpR family
Streptococcus pasteurianus · GCF_003433675
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433675#DW244_RS09460Stable P2CS identifier used across views.
GenomeGCF_003433675Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 232 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 32.3% of protein
Raw token
Trans_reg_C:156:1.09e-26:230:75:77- Raw architecture: Response_reg:12:1.58e-23:121:111:111#Trans_reg_C:156:1.09e-26:230:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433675::NZ_QVEM01000015.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22767-24824Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW244_09460RefSeq proteinWP_117479849.1
Context group ID
GCF_003433675::NZ_QVEM01000015.1::G00005Context members
DW244_RS09455DW244_RS09460
Partner locus tags
DW244_RS09455DW244_RS09460
Partner old locus tags
DW244_09455DW244_09460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117479849.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW244_RS09460Primary locus identifier stored in the genes table.
Old locus tagDW244_09460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEM01000015.1Sequence record reported by the local genomic context database.
Genomic interval24 126-24 824 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 767-24 824 ntGCF_003433675::NZ_QVEM01000015.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433675::NZ_QVEM01000015.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEM01000015.1All displayed genes belong to this local TCS context.
Neighborhood span22 767-24 824 nt2 058 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 767 nt24 824 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW244_RS09455GCF_003433675#DW244_RS09455
HKClassic
22 767-24 116 nt · Reverse (-)
DW244_RS09460GCF_003433675#DW244_RS09460
RROmpRCurrent focus
24 126-24 824 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433675#DW244_RS09460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129346
Simplified PFAM architecture for RROC_1129346
PFAM domain coverage: 184 / 232 aa (79.3%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_1129346
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_003433675#DW244_RS09460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_003433675
AssemblyASM343367v1 · Scaffoldhaploid
Genome composition2 217 913 bp · 37,5% GCStreptococcus pasteurianus
Signal transduction countsGenes 34 · HK 16 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key