1 HisKA#1
128-172 aa · 45 aa · 13.5% of protein
Raw token
HisKA:128:0.0000906:172:54:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW244_RS01825
Histidine kinase, Classic
Streptococcus pasteurianus · GCF_003433675
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433675#DW244_RS01825Stable P2CS identifier used across views.
GenomeGCF_003433675Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 333 aa (46.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-325 aa · 109 aa · 32.7% of protein
Raw token
HATPase_c:217:2.38e-22:325:109:109- Raw architecture: HisKA:128:0.0000906:172:54:64#HATPase_c:217:2.38e-22:325:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433675::NZ_QVEM01000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156836-158493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW244_01825RefSeq proteinWP_117508724.1
Context group ID
GCF_003433675::NZ_QVEM01000002.1::G00007Context members
DW244_RS01820DW244_RS01825
Partner locus tags
DW244_RS01820DW244_RS01825
Partner old locus tags
DW244_01820DW244_01825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117508724.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW244_RS01825Primary locus identifier stored in the genes table.
Old locus tagDW244_01825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEM01000002.1Sequence record reported by the local genomic context database.
Genomic interval157 492-158 493 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 836-158 493 ntGCF_003433675::NZ_QVEM01000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433675::NZ_QVEM01000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span156 836-158 493 nt1 658 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 836 nt158 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW244_RS01820GCF_003433675#DW244_RS01820
RROmpR
156 836-157 495 nt · Forward (+)
DW244_RS01825GCF_003433675#DW244_RS01825
HKClassicCurrent focus
157 492-158 493 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433675#DW244_RS01825The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2851999
Simplified PFAM architecture for HKOC_2851999
PFAM domain coverage: 109 / 333 aa (32.7%)
1 aa333 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[218-326]
- Domain count: 1
- Matched identifier: HKOC_2851999
- Positioned domains: HATPase_c 218-326
Cluster members and taxonomy
Representative gene: GCF_003433675#DW244_RS01825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_003433675
AssemblyASM343367v1 · Scaffoldhaploid
Genome composition2 217 913 bp · 37,5% GCStreptococcus pasteurianus
Signal transduction countsGenes 34 · HK 16 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key