1 Response_reg#1
7-119 aa · 113 aa · 52.8% of protein
Raw token
Response_reg:7:2.57e-23:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW244_RS08965
Response regulator NarL family
Streptococcus pasteurianus · GCF_003433675
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433675#DW244_RS08965Stable P2CS identifier used across views.
GenomeGCF_003433675Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 214 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.1% of protein
Raw token
HTH_LUXR:146:4.62e-25:203:58:58- Raw architecture: Response_reg:7:2.57e-23:119:113:111#HTH_LUXR:146:4.62e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433675::NZ_QVEM01000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42180-43833Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW244_08965RefSeq proteinWP_013851527.1
Context group ID
GCF_003433675::NZ_QVEM01000013.1::G00004Context members
DW244_RS08960DW244_RS08965
Partner locus tags
DW244_RS08960DW244_RS08965
Partner old locus tags
DW244_08960DW244_08965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013851527.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YEW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YEW8_STRMCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW244_RS08965Primary locus identifier stored in the genes table.
Old locus tagDW244_08965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEM01000013.1Sequence record reported by the local genomic context database.
Genomic interval43 189-43 833 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 180-43 833 ntGCF_003433675::NZ_QVEM01000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433675::NZ_QVEM01000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEM01000013.1All displayed genes belong to this local TCS context.
Neighborhood span42 180-43 833 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 180 nt43 833 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW244_RS08960GCF_003433675#DW244_RS08960
HKClassic
42 180-43 205 nt · Forward (+)
DW244_RS08965GCF_003433675#DW244_RS08965
RRNarLCurrent focus
43 189-43 833 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000270165#SGPB_RS02230Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1935315
Simplified PFAM architecture for RROC_1935315
PFAM domain coverage: 168 / 214 aa (78.5%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-119] | GerE[149-203]
- Domain count: 2
- Matched identifier: RROC_1935315
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GerE 149-203 ; GerE 149-203
Cluster members and taxonomy
Representative gene: GCF_000270165#SGPB_RS02230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_003433675
AssemblyASM343367v1 · Scaffoldhaploid
Genome composition2 217 913 bp · 37,5% GCStreptococcus pasteurianus
Signal transduction countsGenes 34 · HK 16 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key