1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:6.1e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW244_RS02650
Response regulator OmpR family
Streptococcus pasteurianus · GCF_003433675
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433675#DW244_RS02650Stable P2CS identifier used across views.
GenomeGCF_003433675Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:156:3.3e-35:232:77:77- Raw architecture: Response_reg:4:6.1e-37:113:111:111#Trans_reg_C:156:3.3e-35:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433675::NZ_QVEM01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114801-116856Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW244_02650RefSeq proteinWP_003065770.1
Context group ID
GCF_003433675::NZ_QVEM01000003.1::G00010Context members
DW244_RS02645DW244_RS02650
Partner locus tags
DW244_RS02645DW244_RS02650
Partner old locus tags
DW244_02645DW244_02650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003065770.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YFM7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YFM7_STRMCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW244_RS02650Primary locus identifier stored in the genes table.
Old locus tagDW244_02650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVEM01000003.1Sequence record reported by the local genomic context database.
Genomic interval116 146-116 856 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span114 801-116 856 ntGCF_003433675::NZ_QVEM01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433675::NZ_QVEM01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVEM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span114 801-116 856 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 801 nt116 856 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW244_RS02645GCF_003433675#DW244_RS02645
HKClassic
114 801-116 153 nt · Reverse (-)
DW244_RS02650GCF_003433675#DW244_RS02650
RROmpRCurrent focus
116 146-116 856 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS06885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988448
Simplified PFAM architecture for RROC_0988448
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0988448
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS06885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 197 614 · GCF_003433675
AssemblyASM343367v1 · Scaffoldhaploid
Genome composition2 217 913 bp · 37,5% GCStreptococcus pasteurianus
Signal transduction countsGenes 34 · HK 16 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key