1 HisKA_3#1
245-307 aa · 63 aa · 7.7% of protein
Raw token
HisKA_3:245:7.63e-16:307:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE163_RS04775
Histidine kinase, Classic
Bifidobacterium breve · GCF_003370295
ClassHKTypeClassicLength822 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370295#CE163_RS04775Stable P2CS identifier used across views.
GenomeGCF_003370295Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length822 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 822 aa (27.5%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa822 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
348-439 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:348:0.000000000000571:439:108:1093 HisKA_3#3
698-768 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:698:0.0000115:768:71:68- Raw architecture: HisKA_3:245:7.63e-16:307:63:68#HATPase_c:348:0.000000000000571:439:108:109#HisKA_3:698:0.0000115:768:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370295::NZ_NJOF01000004.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span179863-183159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE163_04700RefSeq proteinWP_115786073.1
Context group ID
GCF_003370295::NZ_NJOF01000004.1::G00008Context members
CE163_RS04770CE163_RS04775
Partner locus tags
CE163_RS04770CE163_RS04775
Partner old locus tags
CE163_04695CE163_04700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_115786073.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE163_RS04775Primary locus identifier stored in the genes table.
Old locus tagCE163_04700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJOF01000004.1Sequence record reported by the local genomic context database.
Genomic interval180 691-183 159 nt2 469 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span179 863-183 159 ntGCF_003370295::NZ_NJOF01000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370295::NZ_NJOF01000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJOF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span179 863-183 159 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
179 863 nt183 159 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE163_RS04770GCF_003370295#CE163_RS04770
RRNarL
179 863-180 669 nt · Reverse (-)
CE163_RS04775GCF_003370295#CE163_RS04775
HKClassicCurrent focus
180 691-183 159 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370295#CE163_RS04775The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0527756
Simplified PFAM architecture for HKOC_0527756
PFAM domain coverage: 429 / 822 aa (52.2%)
1 aa822 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[14-155] | HisKA_3[245-308] | HATPase_c[348-438] | DUF7134[486-617]
- Domain count: 4
- Matched identifier: HKOC_0527756
- Positioned domains: DUF7134 14-155 ; HisKA_3 245-308 ; HATPase_c 348-438 ; DUF7134 486-617
Cluster members and taxonomy
Representative gene: GCF_003370295#CE163_RS04775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_003370295
AssemblyASM337029v1 · Scaffoldhaploid
Genome composition2 239 257 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 19 · HK 7 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key