1 Response_reg#1
4-95 aa · 92 aa · 96.8% of protein
Raw token
Response_reg:4:1.49e-17:95:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE163_RS02485
Response regulator, CheY family
Bifidobacterium breve · GCF_003370295
ClassRRTypeCheYLength95 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370295#CE163_RS02485Stable P2CS identifier used across views.
GenomeGCF_003370295Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length95 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage92 / 95 aa (96.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa95 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.49e-17:95:92:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370295::NZ_NJOF01000002.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span208072-208357Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE163_02455RefSeq proteinWP_147300039.1
Context group ID
GCF_003370295::NZ_NJOF01000002.1::G00003Context members
CE163_RS02485
Partner locus tags
CE163_RS02485
Partner old locus tags
CE163_02455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147300039.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE163_RS02485Primary locus identifier stored in the genes table.
Old locus tagCE163_02455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJOF01000002.1Sequence record reported by the local genomic context database.
Genomic interval208 072-208 357 nt286 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 072-208 357 ntGCF_003370295::NZ_NJOF01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370295::NZ_NJOF01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJOF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span208 072-208 357 nt286 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 072 nt208 357 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE163_RS02485GCF_003370295#CE163_RS02485
RRCheYCurrent focus
208 072-208 357 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS05285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354241
Simplified PFAM architecture for RROC_1354241
PFAM domain coverage: 173 / 227 aa (76.2%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[161-215]
- Domain count: 2
- Matched identifier: RROC_1354241
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 161-215 ; GerE 161-215
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS05285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_003370295
AssemblyASM337029v1 · Scaffoldhaploid
Genome composition2 239 257 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 19 · HK 7 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key