1 Response_reg#1
6-81 aa · 76 aa · 93.8% of protein
Raw token
Response_reg:6:0.0000000000294:81:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE161_RS06905
Response regulator, CheY family
Bifidobacterium longum · GCF_003370255
ClassRRTypeCheYLength81 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370255#CE161_RS06905Stable P2CS identifier used across views.
GenomeGCF_003370255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length81 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage76 / 81 aa (93.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa81 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.0000000000294:81:76:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370255::NZ_NJNZ01000038.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6171-6413Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003370255::NZ_NJNZ01000038.1::G00006Context members
CE161_RS06905
Partner locus tags
CE161_RS06905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147295277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE161_RS06905Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NJNZ01000038.1Sequence record reported by the local genomic context database.
Genomic interval6 171-6 413 nt243 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 171-6 413 ntGCF_003370255::NZ_NJNZ01000038.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370255::NZ_NJNZ01000038.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNZ01000038.1All displayed genes belong to this local TCS context.
Neighborhood span6 171-6 413 nt243 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 171 nt6 413 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE161_RS06905GCF_003370255#CE161_RS06905
RRCheYCurrent focus
6 171-6 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041900695#ACEUKI_RS00500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2473049
Simplified PFAM architecture for RROC_2473049
PFAM domain coverage: 84 / 95 aa (88.4%)
1 aa95 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-89]
- Domain count: 1
- Matched identifier: RROC_2473049
- Positioned domains: Response_reg 6-89
Cluster members and taxonomy
Representative gene: GCF_041900695#ACEUKI_RS00500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370255
AssemblyASM337025v1 · Scaffoldhaploid
Genome composition2 275 165 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key