1 HAMP#1
252-320 aa · 69 aa · 10.8% of protein
Raw token
HAMP:252:9.1e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE164_RS04350
Histidine kinase, Classic
Bifidobacterium breve · GCF_003370105
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370105#CE164_RS04350Stable P2CS identifier used across views.
GenomeGCF_003370105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 641 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
332-401 aa · 70 aa · 10.9% of protein
Raw token
HisKA:332:6.28e-18:401:70:643 HATPase_c#3
465-612 aa · 148 aa · 23.1% of protein
Raw token
HATPase_c:465:5.34e-21:612:148:109- Raw architecture: HAMP:252:9.1e-16:320:69:69#HisKA:332:6.28e-18:401:70:64#HATPase_c:465:5.34e-21:612:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370105::NZ_NJOA01000005.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136040-138773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE164_04290RefSeq proteinWP_419670994.1
Context group ID
GCF_003370105::NZ_NJOA01000005.1::G00003Context members
CE164_RS04345CE164_RS04350
Partner locus tags
CE164_RS04345CE164_RS04350
Partner old locus tags
CE164_04285CE164_04290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_419670994.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE164_RS04350Primary locus identifier stored in the genes table.
Old locus tagCE164_04290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJOA01000005.1Sequence record reported by the local genomic context database.
Genomic interval136 815-138 773 nt1 959 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span136 040-138 773 ntGCF_003370105::NZ_NJOA01000005.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370105::NZ_NJOA01000005.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJOA01000005.1All displayed genes belong to this local TCS context.
Neighborhood span136 040-138 773 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 040 nt138 773 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE164_RS04345GCF_003370105#CE164_RS04345
RROmpR
136 040-136 771 nt · Forward (+)
CE164_RS04350GCF_003370105#CE164_RS04350
HKClassicCurrent focus
136 815-138 773 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370105#CE164_RS04350The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0918986
Simplified PFAM architecture for HKOC_0918986
PFAM domain coverage: 268 / 641 aa (41.8%)
1 aa641 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-401] | HATPase_c[465-611]
- Domain count: 3
- Matched identifier: HKOC_0918986
- Positioned domains: HAMP 269-320 ; HisKA 333-401 ; HATPase_c 465-611
Cluster members and taxonomy
Representative gene: GCF_003370105#CE164_RS04350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_003370105
AssemblyASM337010v1 · Scaffoldhaploid
Genome composition2 290 315 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 19 · HK 9 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key