1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.000000000000911:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DET63_RS06770
Histidine kinase, Classic
Bacillus sp. DB-2 · GCF_003315125
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003315125#DET63_RS06770Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 476 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-304 aa · 58 aa · 12.2% of protein
Raw token
HisKA:247:0.00000000000437:304:58:643 HATPase_c#3
356-464 aa · 109 aa · 22.9% of protein
Raw token
HATPase_c:356:1.13e-21:464:109:109- Raw architecture: HAMP:167:0.000000000000911:235:69:69#HisKA:247:0.00000000000437:304:58:64#HATPase_c:356:1.13e-21:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003315125::NZ_QNRN01000003.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span257803-259916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDET63_103244RefSeq proteinWP_113936318.1
Context group ID
GCF_003315125::NZ_QNRN01000003.1::G00020Context members
DET63_RS06765DET63_RS06770
Partner locus tags
DET63_RS06765DET63_RS06770
Partner old locus tags
DET63_103243DET63_103244
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_113936318.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D9VK33Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D9VK33_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDET63_RS06770Primary locus identifier stored in the genes table.
Old locus tagDET63_103244Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNRN01000003.1Sequence record reported by the local genomic context database.
Genomic interval258 486-259 916 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span257 803-259 916 ntGCF_003315125::NZ_QNRN01000003.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003315125::NZ_QNRN01000003.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNRN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span257 803-259 916 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
257 803 nt259 916 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DET63_RS06765GCF_003315125#DET63_RS06765
RROmpR
257 803-258 474 nt · Forward (+)
DET63_RS06770GCF_003315125#DET63_RS06770
HKClassicCurrent focus
258 486-259 916 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003315125#DET63_RS06770The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1657220
Simplified PFAM architecture for HKOC_1657220
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[248-308] | HATPase_c[358-462]
- Domain count: 3
- Matched identifier: HKOC_1657220
- Positioned domains: HAMP 184-235 ; HisKA 248-308 ; HATPase_c 358-462
Cluster members and taxonomy
Representative gene: GCF_003315125#DET63_RS06770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 030 092 · GCF_003315125
AssemblyASM331512v1 · Scaffoldhaploid
Genome composition5 798 937 bp · 35,0% GCBacillus sp. DB-2
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key