1 Response_reg#1
3-112 aa · 110 aa · 21.8% of protein
Raw token
Response_reg:3:1.87e-31:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS14275
Response regulator, unclassified
Blautia argi · GCF_003287895
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS14275Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 505 aa (37.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-453 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:412:0.0000384:453:42:423 HTH_AraC#3
468-502 aa · 35 aa · 6.9% of protein
Raw token
HTH_AraC:468:0.000000000611:502:35:42- Raw architecture: Response_reg:3:1.87e-31:112:110:111#HTH_AraC:412:0.0000384:453:42:42#HTH_AraC:468:0.000000000611:502:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2933863-2937098Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_14270RefSeq proteinWP_162624333.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00047Context members
DQQ01_RS14270DQQ01_RS14275
Partner locus tags
DQQ01_RS14270DQQ01_RS14275
Partner old locus tags
DQQ01_14265DQQ01_14270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_162624333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS14275Primary locus identifier stored in the genes table.
Old locus tagDQQ01_14270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval2 935 581-2 937 098 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 933 863-2 937 098 ntGCF_003287895::NZ_CP030280.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span2 933 863-2 937 098 nt3 236 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 933 863 nt2 937 098 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS14270GCF_003287895#DQQ01_RS14270
HKClassic
2 933 863-2 935 584 nt · Reverse (-)
DQQ01_RS14275GCF_003287895#DQQ01_RS14275
RRunclassifiedCurrent focus
2 935 581-2 937 098 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS14275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152565
Simplified PFAM architecture for RROC_0152565
PFAM domain coverage: 188 / 505 aa (37.2%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-112] | HTH_18[426-503]
- Domain count: 2
- Matched identifier: RROC_0152565
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; HTH_18 426-503 ; HTH_18 426-503
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS14275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key