1 Response_reg#1
41-118 aa · 78 aa · 31.6% of protein
Raw token
Response_reg:41:0.0000000217:118:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS07890
Response regulator LytTR family
Blautia argi · GCF_003287895
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287895#DQQ01_RS07890Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 247 aa (68.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-232 aa · 90 aa · 36.4% of protein
Raw token
LytTR:143:0.0000000000000466:232:93:98- Raw architecture: Response_reg:41:0.0000000217:118:86:111#LytTR:143:0.0000000000000466:232:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287895::NZ_CP030280.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1616576-1617319Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_07895RefSeq proteinWP_111919567.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00033Context members
DQQ01_RS07890
Partner locus tags
DQQ01_RS07890
Partner old locus tags
DQQ01_07895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111919567.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4UAM7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4UAM7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS07890Primary locus identifier stored in the genes table.
Old locus tagDQQ01_07895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval1 616 576-1 617 319 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 616 576-1 617 319 ntGCF_003287895::NZ_CP030280.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span1 616 576-1 617 319 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 616 576 nt1 617 319 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DQQ01_RS07890GCF_003287895#DQQ01_RS07890
RRLytTRCurrent focus
1 616 576-1 617 319 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS07890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0759358
Simplified PFAM architecture for RROC_0759358
PFAM domain coverage: 196 / 247 aa (79.4%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-118] | LytTR[146-232]
- Domain count: 2
- Matched identifier: RROC_0759358
- Positioned domains: Response_reg 10-118 ; Response_reg 10-118 ; LytTR 146-232 ; LytTR 146-232
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS07890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key