1 Response_reg#1
3-111 aa · 109 aa · 74.7% of protein
Raw token
Response_reg:3:0.00000000000905:111:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS07250
Response regulator, CheY family
Blautia argi · GCF_003287895
ClassRRTypeCheYLength146 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287895#DQQ01_RS07250Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length146 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 146 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa146 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.00000000000905:111:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287895::NZ_CP030280.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1489063-1489503Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_07255RefSeq proteinWP_111919478.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00031Context members
DQQ01_RS07250
Partner locus tags
DQQ01_RS07250
Partner old locus tags
DQQ01_07255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111919478.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4UAD1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4UAD1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS07250Primary locus identifier stored in the genes table.
Old locus tagDQQ01_07255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval1 489 063-1 489 503 nt441 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 489 063-1 489 503 ntGCF_003287895::NZ_CP030280.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span1 489 063-1 489 503 nt441 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 489 063 nt1 489 503 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DQQ01_RS07250GCF_003287895#DQQ01_RS07250
RRCheYCurrent focus
1 489 063-1 489 503 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS07250The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2243965
Simplified PFAM architecture for RROC_2243965
PFAM domain coverage: 88 / 146 aa (60.3%)
1 aa146 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[26-113]
- Domain count: 1
- Matched identifier: RROC_2243965
- Positioned domains: Response_reg 26-113 ; Response_reg 26-113
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS07250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key