1 HisKA#1
85-154 aa · 70 aa · 22.9% of protein
Raw token
HisKA:85:0.0000000000959:154:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS05685
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS05685Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 306 aa (57.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
201-305 aa · 105 aa · 34.3% of protein
Raw token
HATPase_c:201:5.83e-24:305:106:109- Raw architecture: HisKA:85:0.0000000000959:154:70:64#HATPase_c:201:5.83e-24:305:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1158624-1160237Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_05690RefSeq proteinWP_111919133.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00020Context members
DQQ01_RS05685DQQ01_RS05690
Partner locus tags
DQQ01_RS05685DQQ01_RS05690
Partner old locus tags
DQQ01_05690DQQ01_05695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111919133.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U9N2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U9N2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS05685Primary locus identifier stored in the genes table.
Old locus tagDQQ01_05690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval1 158 624-1 159 544 nt921 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 158 624-1 160 237 ntGCF_003287895::NZ_CP030280.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span1 158 624-1 160 237 nt1 614 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 158 624 nt1 160 237 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS05685GCF_003287895#DQQ01_RS05685
HKClassicCurrent focus
1 158 624-1 159 544 nt · Reverse (-)
DQQ01_RS05690GCF_003287895#DQQ01_RS05690
RROmpR
1 159 545-1 160 237 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS05685The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881419
Simplified PFAM architecture for HKOC_2881419
PFAM domain coverage: 173 / 306 aa (56.5%)
1 aa306 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-154] | HATPase_c[201-304]
- Domain count: 2
- Matched identifier: HKOC_2881419
- Positioned domains: HisKA 86-154 ; HATPase_c 201-304
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS05685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key