1 Response_reg#1
6-116 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:6:5.76e-21:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS05320
Response regulator LytTR family
Blautia argi · GCF_003287895
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287895#DQQ01_RS05320Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 232 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-223 aa · 82 aa · 35.3% of protein
Raw token
LytTR:142:0.00000000000451:223:88:98- Raw architecture: Response_reg:6:5.76e-21:116:115:111#LytTR:142:0.00000000000451:223:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287895::NZ_CP030280.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1088248-1088946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_05325RefSeq proteinWP_111919005.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00019Context members
DQQ01_RS05320
Partner locus tags
DQQ01_RS05320
Partner old locus tags
DQQ01_05325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111919005.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4UA46Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4UA46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS05320Primary locus identifier stored in the genes table.
Old locus tagDQQ01_05325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval1 088 248-1 088 946 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 088 248-1 088 946 ntGCF_003287895::NZ_CP030280.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span1 088 248-1 088 946 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 088 248 nt1 088 946 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DQQ01_RS05320GCF_003287895#DQQ01_RS05320
RRLytTRCurrent focus
1 088 248-1 088 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS05320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1128974
Simplified PFAM architecture for RROC_1128974
PFAM domain coverage: 194 / 232 aa (83.6%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-115] | LytTR[141-223]
- Domain count: 2
- Matched identifier: RROC_1128974
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; LytTR 141-223 ; LytTR 141-223
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS05320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key