1 HisKA#1
321-385 aa · 65 aa · 12.0% of protein
Raw token
HisKA:321:0.00000000000000175:385:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS04970
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength541 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS04970Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length541 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 541 aa (29.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa541 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
431-524 aa · 94 aa · 17.4% of protein
Raw token
HATPase_c:431:0.0000000000000924:524:98:109- Raw architecture: HisKA:321:0.00000000000000175:385:65:64#HATPase_c:431:0.0000000000000924:524:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1015322-1017620Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_04975RefSeq proteinWP_111918915.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00018Context members
DQQ01_RS04965DQQ01_RS04970
Partner locus tags
DQQ01_RS04965DQQ01_RS04970
Partner old locus tags
DQQ01_04970DQQ01_04975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918915.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U994Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U994_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS04970Primary locus identifier stored in the genes table.
Old locus tagDQQ01_04975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval1 015 995-1 017 620 nt1 626 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 015 322-1 017 620 ntGCF_003287895::NZ_CP030280.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span1 015 322-1 017 620 nt2 299 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 015 322 nt1 017 620 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS04965GCF_003287895#DQQ01_RS04965
RROmpR
1 015 322-1 016 020 nt · Forward (+)
DQQ01_RS04970GCF_003287895#DQQ01_RS04970
HKClassicCurrent focus
1 015 995-1 017 620 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS04970The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1318100
Simplified PFAM architecture for HKOC_1318100
PFAM domain coverage: 158 / 541 aa (29.2%)
1 aa541 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[321-384] | HATPase_c[431-524]
- Domain count: 2
- Matched identifier: HKOC_1318100
- Positioned domains: HisKA 321-384 ; HATPase_c 431-524
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS04970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key