1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:3e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS04965
Response regulator OmpR family
Blautia argi · GCF_003287895
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS04965Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:2.4e-34:229:77:77- Raw architecture: Response_reg:6:3e-36:115:111:111#Trans_reg_C:153:2.4e-34:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1015322-1017620Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_04970RefSeq proteinWP_111918913.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00018Context members
DQQ01_RS04965DQQ01_RS04970
Partner locus tags
DQQ01_RS04965DQQ01_RS04970
Partner old locus tags
DQQ01_04970DQQ01_04975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918913.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U9C9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U9C9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS04965Primary locus identifier stored in the genes table.
Old locus tagDQQ01_04970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval1 015 322-1 016 020 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 015 322-1 017 620 ntGCF_003287895::NZ_CP030280.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span1 015 322-1 017 620 nt2 299 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 015 322 nt1 017 620 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS04965GCF_003287895#DQQ01_RS04965
RROmpRCurrent focus
1 015 322-1 016 020 nt · Forward (+)
DQQ01_RS04970GCF_003287895#DQQ01_RS04970
HKClassic
1 015 995-1 017 620 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS04965The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1128973
Simplified PFAM architecture for RROC_1128973
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1128973
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS04965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key