1 HAMP#1
306-375 aa · 70 aa · 11.6% of protein
Raw token
HAMP:306:0.000000222:375:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS04620
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287895#DQQ01_RS04620Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 606 aa (42.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-468 aa · 77 aa · 12.7% of protein
Raw token
His_kinase:392:5.04e-23:468:78:803 HATPase_c#3
487-596 aa · 110 aa · 18.2% of protein
Raw token
HATPase_c:487:0.000000000543:596:110:109- Raw architecture: HAMP:306:0.000000222:375:73:69#His_kinase:392:5.04e-23:468:78:80#HATPase_c:487:0.000000000543:596:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287895::NZ_CP030280.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span925226-927046Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_04625RefSeq proteinWP_111918791.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00017Context members
DQQ01_RS04620
Partner locus tags
DQQ01_RS04620
Partner old locus tags
DQQ01_04625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918791.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U957Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U957_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS04620Primary locus identifier stored in the genes table.
Old locus tagDQQ01_04625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval925 226-927 046 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span925 226-927 046 ntGCF_003287895::NZ_CP030280.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span925 226-927 046 nt1 821 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
925 226 nt927 046 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DQQ01_RS04620GCF_003287895#DQQ01_RS04620
HKClassicCurrent focus
925 226-927 046 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS04620The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1024443
Simplified PFAM architecture for HKOC_1024443
PFAM domain coverage: 188 / 606 aa (31.0%)
1 aa606 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[392-468] | HATPase_c[487-597]
- Domain count: 2
- Matched identifier: HKOC_1024443
- Positioned domains: His_kinase 392-468 ; HATPase_c 487-597
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS04620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key