1 HisKA#1
84-150 aa · 67 aa · 22.0% of protein
Raw token
HisKA:84:0.0000000000868:150:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS04520
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS04520Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 305 aa (56.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-305 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:202:2.56e-23:305:104:109- Raw architecture: HisKA:84:0.0000000000868:150:67:64#HATPase_c:202:2.56e-23:305:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span908657-910251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_04525RefSeq proteinWP_111918761.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00016Context members
DQQ01_RS04515DQQ01_RS04520
Partner locus tags
DQQ01_RS04515DQQ01_RS04520
Partner old locus tags
DQQ01_04520DQQ01_04525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918761.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U939Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U939_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS04520Primary locus identifier stored in the genes table.
Old locus tagDQQ01_04525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval909 334-910 251 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span908 657-910 251 ntGCF_003287895::NZ_CP030280.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span908 657-910 251 nt1 595 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
908 657 nt910 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS04515GCF_003287895#DQQ01_RS04515
RROmpR
908 657-909 334 nt · Forward (+)
DQQ01_RS04520GCF_003287895#DQQ01_RS04520
HKClassicCurrent focus
909 334-910 251 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS04520The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882307
Simplified PFAM architecture for HKOC_2882307
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-150] | HATPase_c[199-303]
- Domain count: 2
- Matched identifier: HKOC_2882307
- Positioned domains: HisKA 85-150 ; HATPase_c 199-303
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS04520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key