1 sCache_like#1
30-127 aa · 98 aa · 22.1% of protein
Raw token
sCache_like:30:0.0000000159:127:103:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS03030
Histidine kinase, Classic
Blautia argi · GCF_003287895
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS03030Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage272 / 443 aa (61.4%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-290 aa · 65 aa · 14.7% of protein
Raw token
HisKA:226:7.18e-17:290:65:643 HATPase_c#3
335-443 aa · 109 aa · 24.6% of protein
Raw token
HATPase_c:335:1.7e-33:443:109:109- Raw architecture: sCache_like:30:0.0000000159:127:103:114#HisKA:226:7.18e-17:290:65:64#HATPase_c:335:1.7e-33:443:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span587726-589728Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_03035RefSeq proteinWP_111918311.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00010Context members
DQQ01_RS03025DQQ01_RS03030
Partner locus tags
DQQ01_RS03025DQQ01_RS03030
Partner old locus tags
DQQ01_03030DQQ01_03035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918311.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U914Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U914_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS03030Primary locus identifier stored in the genes table.
Old locus tagDQQ01_03035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval588 397-589 728 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span587 726-589 728 ntGCF_003287895::NZ_CP030280.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span587 726-589 728 nt2 003 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
587 726 nt589 728 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS03025GCF_003287895#DQQ01_RS03025
RROmpR
587 726-588 400 nt · Forward (+)
DQQ01_RS03030GCF_003287895#DQQ01_RS03030
HKClassicCurrent focus
588 397-589 728 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS03030The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2043861
Simplified PFAM architecture for HKOC_2043861
PFAM domain coverage: 251 / 443 aa (56.7%)
1 aa443 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[51-131] | HisKA[226-290] | HATPase_c[338-442]
- Domain count: 3
- Matched identifier: HKOC_2043861
- Positioned domains: sCache_like 51-131 ; HisKA 226-290 ; HATPase_c 338-442
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS03030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key