1 Response_reg#1
3-107 aa · 105 aa · 55.6% of protein
Raw token
Response_reg:3:2.19e-30:107:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DQQ01_RS02395
Response regulator, AmiR_NasR family
Blautia argi · GCF_003287895
ClassRRTypeAmiR_NasRLength189 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287895#DQQ01_RS02395Stable P2CS identifier used across views.
GenomeGCF_003287895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length189 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 189 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa189 aa
Domain-by-domain annotation2 items
2 ANTAR#2
136-184 aa · 49 aa · 25.9% of protein
Raw token
ANTAR:136:1.25e-16:184:49:49- Raw architecture: Response_reg:3:2.19e-30:107:105:111#ANTAR:136:1.25e-16:184:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287895::NZ_CP030280.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span474698-476681Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDQQ01_02400RefSeq proteinWP_111918111.1
Context group ID
GCF_003287895::NZ_CP030280.1::G00007Context members
DQQ01_RS02395DQQ01_RS02400
Partner locus tags
DQQ01_RS02395DQQ01_RS02400
Partner old locus tags
DQQ01_02400DQQ01_02405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918111.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U872Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U872_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDQQ01_RS02395Primary locus identifier stored in the genes table.
Old locus tagDQQ01_02400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030280.1Sequence record reported by the local genomic context database.
Genomic interval474 698-475 267 nt570 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span474 698-476 681 ntGCF_003287895::NZ_CP030280.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287895::NZ_CP030280.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030280.1All displayed genes belong to this local TCS context.
Neighborhood span474 698-476 681 nt1 984 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
474 698 nt476 681 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DQQ01_RS02395GCF_003287895#DQQ01_RS02395
RRAmiR_NasRCurrent focus
474 698-475 267 nt · Forward (+)
DQQ01_RS02400GCF_003287895#DQQ01_RS02400
HKClassic
475 269-476 681 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS02395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2172359
Simplified PFAM architecture for RROC_2172359
PFAM domain coverage: 157 / 189 aa (83.1%)
1 aa189 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[3-108] | ANTAR[133-183]
- Domain count: 2
- Matched identifier: RROC_2172359
- Positioned domains: Response_reg 3-108 ; Response_reg 3-108 ; ANTAR 133-183 ; ANTAR 133-183
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS02395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 897 · GCF_003287895
AssemblyASM328789v1 · Complete Genomereference genome · haploid
Genome composition3 297 975 bp · 42,0% GCBlautia argi
Signal transduction countsGenes 100 · HK 50 · RR 50CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key